Signatures

Signatures#

BBKNN#

scripts.metasigs.early_integration.bbknn_latent.get_args()[source]#

scripts.metasigs.early_integration.bbknn_latent.get_latent(adata: AnnData) → DataFrame[source]#

scripts.metasigs.early_integration.bbknn_latent.main()[source]#

scripts.metasigs.early_integration.bbknn_latent.read_anndata(path: str)[source]#

Harmony#

scripts.metasigs.early_integration.harmony_latent.get_args()[source]#

scripts.metasigs.early_integration.harmony_latent.get_latent(adata: AnnData) → DataFrame[source]#

scripts.metasigs.early_integration.harmony_latent.main()[source]#

scripts.metasigs.early_integration.harmony_latent.read_anndata(path: str)[source]#

scVI#

scripts.metasigs.early_integration.scvi_latent.get_args()[source]#

scripts.metasigs.early_integration.scvi_latent.get_latent(adata: AnnData) → DataFrame[source]#

scripts.metasigs.early_integration.scvi_latent.main()[source]#

scripts.metasigs.early_integration.scvi_latent.read_anndata(path: str)[source]#

Unintegrated#

scripts.metasigs.early_integration.unintegrated.get_args()[source]#

scripts.metasigs.early_integration.unintegrated.main()[source]#

scripts.metasigs.early_integration.unintegrated.read_anndata(path: str)[source]#

Signatures#

scripts.metasigs.early_integration.get_signatures.add_latent(path: str, adata: AnnData) → AnnData[source]#

scripts.metasigs.early_integration.get_signatures.get_args()[source]#

scripts.metasigs.early_integration.get_signatures.get_cluster(adata, n_cluster, random_seed, start: float = 0.0001, end: float = 2.0, epsilon: float = 1e-08)[source]#

scripts.metasigs.early_integration.get_signatures.get_metasigs(adata: AnnData, latent: str, n_cluster: int, random_seed: int) → DataFrame[source]#

scripts.metasigs.early_integration.get_signatures.main()[source]#

scripts.metasigs.early_integration.get_signatures.read_anndata(path: str)[source]#