Index

A

assign_clusters_to_signatures() (signaturescoring.scoring_methods.gmm_postprocessing.GMMPostprocessor method)

C

check_score_names() (in module signaturescoring.scoring_methods.gmm_postprocessing) check_signature_genes() (in module signaturescoring.utils.utils) checks_ctrl_size() (in module signaturescoring.utils.utils) commonPrefix() (in module signaturescoring.utils.utils)

commonPrefixUtil() (in module signaturescoring.utils.utils) compute_avg_ranks_sig_subset() (in module signaturescoring.scoring_methods.jasmine_scoring) compute_avg_ranks_signature() (in module signaturescoring.scoring_methods.jasmine_scoring) compute_ranks_and_ustat() (in module signaturescoring.scoring_methods.ucell_scoring) compute_signature_score() (in module signaturescoring.scoring_methods.compute_signature_score)

F

fit_and_predict() (signaturescoring.scoring_methods.gmm_postprocessing.GMMPostprocessor method)

G

get_AUC_and_F1_performance() (in module signaturescoring.utils.metrics) get_bins_wrt_avg_gene_expression() (in module signaturescoring.utils.utils) get_data_for_gene_pool() (in module signaturescoring.utils.utils) get_gene_list_real_data() (in module signaturescoring.utils.utils)

get_least_variable_genes_per_bin_v1() (in module signaturescoring.utils.utils) get_least_variable_genes_per_bin_v2() (in module signaturescoring.utils.utils) get_mean_and_variance_gene_expression() (in module signaturescoring.utils.utils) get_test_statistics() (in module signaturescoring.utils.metrics) GMMPostprocessor (class in signaturescoring.scoring_methods.gmm_postprocessing)

L

likelihood_calculation() (in module signaturescoring.scoring_methods.jasmine_scoring)

M

module signaturescoring signaturescoring.scoring_methods signaturescoring.scoring_methods.adjusted_neighborhood_scoring signaturescoring.scoring_methods.compute_signature_score signaturescoring.scoring_methods.corrected_scanpy_scoring signaturescoring.scoring_methods.gene_signature_scoring signaturescoring.scoring_methods.gmm_postprocessing signaturescoring.scoring_methods.jasmine_scoring signaturescoring.scoring_methods.neighborhood_scoring signaturescoring.scoring_methods.seurat_ag_scoring signaturescoring.scoring_methods.seurat_lvg_scoring signaturescoring.scoring_methods.seurat_scoring signaturescoring.scoring_methods.ucell_scoring signaturescoring.utils signaturescoring.utils.metrics signaturescoring.utils.utils

N

nanmean() (in module signaturescoring.utils.utils)

nextnonexistent() (in module signaturescoring.utils.utils)

O

or_calculation() (in module signaturescoring.scoring_methods.jasmine_scoring)

P

preparation() (in module signaturescoring.scoring_methods.jasmine_scoring)

R

rank_calculation() (in module signaturescoring.scoring_methods.jasmine_scoring)

S

score_genes() (in module signaturescoring.scoring_methods.adjusted_neighborhood_scoring) (in module signaturescoring.scoring_methods.corrected_scanpy_scoring) (in module signaturescoring.scoring_methods.jasmine_scoring) (in module signaturescoring.scoring_methods.neighborhood_scoring) (in module signaturescoring.scoring_methods.seurat_ag_scoring) (in module signaturescoring.scoring_methods.seurat_lvg_scoring) (in module signaturescoring.scoring_methods.seurat_scoring) (in module signaturescoring.scoring_methods.ucell_scoring) score_signature() (in module signaturescoring) (in module signaturescoring.scoring_methods.gene_signature_scoring) signaturescoring module signaturescoring.scoring_methods module signaturescoring.scoring_methods.adjusted_neighborhood_scoring module signaturescoring.scoring_methods.compute_signature_score module signaturescoring.scoring_methods.corrected_scanpy_scoring module signaturescoring.scoring_methods.gene_signature_scoring module

signaturescoring.scoring_methods.gmm_postprocessing module signaturescoring.scoring_methods.jasmine_scoring module signaturescoring.scoring_methods.neighborhood_scoring module signaturescoring.scoring_methods.seurat_ag_scoring module signaturescoring.scoring_methods.seurat_lvg_scoring module signaturescoring.scoring_methods.seurat_scoring module signaturescoring.scoring_methods.ucell_scoring module signaturescoring.utils module signaturescoring.utils.metrics module signaturescoring.utils.utils module

U

u_stat() (in module signaturescoring.scoring_methods.ucell_scoring)